Jayashree Kalpathy-Cramer, PhD

Professor, Ophthalmology

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Graduate Schools
  • PhD, Rensselaer Polytechnic Institute (1993)
  • MS, Oregon Health And Science University
Languages
English
Department
Ophthalmology

Professional Titles

  • Professor
  • Chief, Division of Artificial Medical Intelligence, Ophthalmology
  • Director, Health Informatics, CCTSI

Publications

  • Hallaj S, Chuter BG, Lieu AC, Singh P, Kalpathy-Cramer J, Xu BY, Christopher M, Zangwill LM, Weinreb RN, Baxter SL. Federated Learning in Glaucoma: A Comprehensive Review and Future Perspectives. Ophthalmol Glaucoma. 2025 Jan-Feb;8(1):92-105. PubMed PMID: 39214457
  • Lekadir K, Frangi AF, Porras AR, Glocker B, Cintas C, Langlotz CP, Weicken E, Asselbergs FW, Prior F, Collins GS, Kaissis G, Tsakou G, Buvat I, Kalpathy-Cramer J, Mongan J, Schnabel JA, Kushibar K, Riklund K, Marias K, Amugongo LM, Fromont LA, Maier-Hein L, Cerdá-Alberich L, Martí-Bonmatí L, Cardoso MJ, Bobowicz M, Shabani M, Tsiknakis M, Zuluaga MA, Fritzsche MC, Camacho M, Linguraru MG, Wenzel M, De Bruijne M, Tolsgaard MG, Goisauf M, Cano Abadía M, Papanikolaou N, Lazrak N, Pujol O, Osuala R, Napel S, Colantonio S, Joshi S, Klein S, Aussó S, Rogers WA, Salahuddin Z, Starmans MPA. FUTURE-AI: international consensus guideline for trustworthy and deployable artificial intelligence in healthcare. BMJ. 2025 Feb 5;388:e081554. PubMed PMID: 39909534
  • Veturi YA, McNamara S, Kinder S, Clark CW, Thakuria U, Bearce B, Manoharan N, Mandava N, Kahook MY, Singh P, Kalpathy-Cramer J. EyeLiner: A Deep Learning Pipeline for Longitudinal Image Registration Using Fundus Landmarks. Ophthalmol Sci. 2025 Mar-Apr;5(2):100664. PubMed PMID: 39877463
  • Idnay B, Xu Z, Adams WG, Adibuzzaman M, Anderson NR, Bahroos N, Bell DS, Bumgardner C, Campion T, Castro M, Cimino JJ, Cohen IG, Dorr D, Elkin PL, Fan JW, Ferris T, Foran DJ, Hanauer D, Hogarth M, Huang K, Kalpathy-Cramer J, Kandpal M, Karnik NS, Katoch A, Lai AM, Lambert CG, Li L, Lindsell C, Liu J, Lu Z, Luo Y, McGarvey P, Mendonca EA, Mirhaji P, Murphy S, Osborne JD, Paschalidis IC, Harris PA, Prior F, Shaheen NJ, Shara N, Sim I, Tachinardi U, Waitman LR, Wright RJ, Zai AH, Zheng K, Lee SS, Malin BA, Natarajan K, Price Ii WN, Zhang R, Zhang Y, Xu H, Bian J, Weng C, Peng Y. Environment scan of generative AI infrastructure for clinical and translational science. Npj Health Syst. 2025;2(1):4. PubMed PMID: 39872195
  • Dorfner FJ, Patel JB, Kalpathy-Cramer J, Gerstner ER, Bridge CP. A review of deep learning for brain tumor analysis in MRI. NPJ Precis Oncol. 2025 Jan 3;9(1):2. PubMed PMID: 39753730
  • Twilt JJ, Saha A, Bosma JS, van Ginneken B, Bjartell A, Padhani AR, Bonekamp D, Villeirs G, Salomon G, Giannarini G, Kalpathy-Cramer J, Barentsz J, Maier-Hein KH, Rusu M, Rouvière O, van den Bergh R, Panebianco V, Kasivisvanathan V, Obuchowski NA, Yakar D, Elschot M, Veltman J, Fütterer JJ, Huisman H, de Rooij M. Evaluating Biparametric Versus Multiparametric Magnetic Resonance Imaging for Diagnosing Clinically Significant Prostate Cancer: An International, Paired, Noninferiority, Confirmatory Observer Study. Eur Urol. 2025 Feb;87(2):240-250. PubMed PMID: 39438187
  • Kang C, Lo JE, Zhang H, Ng SM, Lin JC, Scott IU, Kalpathy-Cramer J, Liu SA, Greenberg PB. Artificial intelligence for diagnosing exudative age-related macular degeneration. Cochrane Database Syst Rev. 2024 Oct 17;10(10):CD015522. PubMed PMID: 39417312
  • Gomez F, Danos AM, Del Fiol G, Madabhushi A, Tiwari P, McMichael JF, Bakas S, Bian J, Davatzikos C, Fertig EJ, Kalpathy-Cramer J, Kenney J, Savova GK, Yetisgen M, Van Allen EM, Warner JL, Prior F, Griffith M, Griffith OL. A New Era of Data-Driven Cancer Research and Care: Opportunities and Challenges. Cancer Discov. 2024 Oct 4;14(10):1774-1778. PubMed PMID: 39363742
  • Ahmed SR, Egemen D, Befano B, Rodriguez AC, Jeronimo J, Desai K, Teran C, Alfaro K, Fokom-Domgue J, Charoenkwan K, Mungo C, Luckett R, Saidu R, Raiol T, Ribeiro A, Gage JC, de Sanjose S, Kalpathy-Cramer J, Schiffman M. Assessing generalizability of an AI-based visual test for cervical cancer screening. PLOS Digit Health. 2024 Oct;3(10):e0000364. PubMed PMID: 39356713
  • Brink L, Romero RA, Coombs L, Tilkin M, Mazaheri S, Gichoya J, Zaiman Z, Trivedi H, Medina A, Bizzo BC, Chang K, Kalpathy-Cramer J, Kalra MK, Astuto B, Ramirez C, Majumdar S, Lee AY, Lee CI, Cross NM, Chen PH, Ciancibello M, Chiunda A, Nachand D, Shah C, Wald C. Multi-Institutional Evaluation and Training of Breast Density Classification AI Algorithm Using ACR Connect and AI-LAB. J Am Coll Radiol. 2024 Nov 17. [Epub ahead of print] PubMed PMID: 39551328
  • Egemen D, Perkins RB, Cheung LC, Befano B, Rodriguez AC, Desai K, Lemay A, Ahmed SR, Antani S, Jeronimo J, Wentzensen N, Kalpathy-Cramer J, De Sanjose S, Schiffman M. Artificial intelligence-based image analysis in clinical testing: lessons from cervical cancer screening. J Natl Cancer Inst. 2024 Jan 10;116(1):26-33. PubMed PMID: 37758250
  • Pati S, Kumar S, Varma A, Edwards B, Lu C, Qu L, Wang JJ, Lakshminarayanan A, Wang SH, Sheller MJ, Chang K, Singh P, Rubin DL, Kalpathy-Cramer J, Bakas S. Privacy preservation for federated learning in health care. Patterns (N Y). 2024 Jul 12;5(7):100974. PubMed PMID: 39081567
  • Linguraru MG, Bakas S, Aboian M, Chang PD, Flanders AE, Kalpathy-Cramer J, Kitamura FC, Lungren MP, Mongan J, Prevedello LM, Summers RM, Wu CC, Adewole M, Kahn CE Jr. Clinical, Cultural, Computational, and Regulatory Considerations to Deploy AI in Radiology: Perspectives of RSNA and MICCAI Experts. Radiol Artif Intell. 2024 Jul;6(4):e240225. PubMed PMID: 38984986
  • Saha A, Bosma JS, Twilt JJ, van Ginneken B, Bjartell A, Padhani AR, Bonekamp D, Villeirs G, Salomon G, Giannarini G, Kalpathy-Cramer J, Barentsz J, Maier-Hein KH, Rusu M, Rouvière O, van den Bergh R, Panebianco V, Kasivisvanathan V, Obuchowski NA, Yakar D, Elschot M, Veltman J, Fütterer JJ, de Rooij M, Huisman H. Artificial intelligence and radiologists in prostate cancer detection on MRI (PI-CAI): an international, paired, non-inferiority, confirmatory study. Lancet Oncol. 2024 Jul;25(7):879-887. PubMed PMID: 38876123
  • Coyner AS, Young BK, Ostmo SR, Grigorian F, Ells A, Hubbard B, Rodriguez SH, Rishi P, Miller AM, Bhatt AR, Agarwal-Sinha S, Sears J, Chan RVP, Chiang MF, Kalpathy-Cramer J, Binenbaum G, Campbell JP. Use of an Artificial Intelligence-Generated Vascular Severity Score Improved Plus Disease Diagnosis in Retinopathy of Prematurity. Ophthalmology. 2024 Nov;131(11):1290-1296. PubMed PMID: 38866367
  • Schmidt K, Bearce B, Chang K, Coombs L, Farahani K, Elbatel M, Mouheb K, Marti R, Zhang R, Zhang Y, Wang Y, Hu Y, Ying H, Xu Y, Testagrose C, Demirer M, Gupta V, Akünal Ü, Bujotzek M, Maier-Hein KH, Qin Y, Li X, Kalpathy-Cramer J, Roth HR. Fair evaluation of federated learning algorithms for automated breast density classification: The results of the 2022 ACR-NCI-NVIDIA federated learning challenge. Med Image Anal. 2024 Jul;95:103206. PubMed PMID: 38776844
  • Nguyen TP, Young BK, Coyner A, Ostmo S, Chan RVP, Kalpathy-Cramer J, Chiang MF, Campbell JP. Discrepancies in Diagnosis of Treatment-Requiring Retinopathy of Prematurity. Ophthalmol Retina. 2024 Jan;8(1):88-91. PubMed PMID: 37689182
  • Egemen D, Perkins RB, Cheung LC, Befano B, Rodriguez AC, Desai K, Lemay A, Ahmed SR, Antani S, Jeronimo J, Wentzensen N, Kalpathy-Cramer J, De Sanjose S, Schiffman M. Artificial intelligence-based image analysis in clinical testing: lessons from cervical cancer screening. J Natl Cancer Inst. 2024 Jan 10;116(1):26-33. PubMed PMID: 37758250
  • Hoebel KV, Bridge CP, Kim A, Gerstner ER, Ly IK, Deng F, DeSalvo MN, Dietrich J, Huang R, Huang SY, Pomerantz SR, Vagvala S, Rosen BR, Kalpathy-Cramer J. Not without Context-A Multiple Methods Study on Evaluation and Correction of Automated Brain Tumor Segmentations by Experts. Acad Radiol. 2024 Apr;31(4):1572-1582. PubMed PMID: 37951777
  • Kim AE, Lou KW, Giobbie-Hurder A, Chang K, Gidwani M, Hoebel K, Patel JB, Cleveland MC, Singh P, Bridge CP, Ahmed SR, Bearce BA, Liu W, Fuster-Garcia E, Lee EQ, Lin NU, Overmoyer B, Wen PY, Nayak L, Cohen JV, Dietrich J, Eichler A, Heist R, Krop I, Lawrence D, Ligibel J, Tolaney S, Mayer E, Winer E, Perrino CM, Summers EJ, Mahar M, Oh K, Shih HA, Cahill DP, Rosen BR, Yen YF, Kalpathy-Cramer J, Martinez-Lage M, Sullivan RJ, Brastianos PK, Emblem KE, Gerstner ER. Abnormal vascular structure and function within brain metastases is linked to pembrolizumab resistance. Neuro Oncol. 2024 May 3;26(5):965-974. PubMed PMID: 38070147
  • Li W, Partridge SC, Newitt DC, Steingrimsson J, Marques HS, Bolan PJ, Hirano M, Bearce BA, Kalpathy-Cramer J, Boss MA, Teng X, Zhang J, Cai J, Kontos D, Cohen EA, Mankowski WC, Liu M, Ha R, Pellicer-Valero OJ, Maier-Hein K, Rabinovici-Cohen S, Tlusty T, Ozery-Flato M, Parekh VS, Jacobs MA, Yan R, Sung K, Kazerouni AS, DiCarlo JC, Yankeelov TE, Chenevert TL, Hylton NM. Breast Multiparametric MRI for Prediction of Neoadjuvant Chemotherapy Response in Breast Cancer: The BMMR2 Challenge. Radiol Imaging Cancer. 2024 Jan;6(1):e230033. PubMed PMID: 38180338
  • Hoebel KV, Bridge CP, Ahmed S, Akintola O, Chung C, Huang RY, Johnson JM, Kim A, Ly KI, Chang K, Patel J, Pinho M, Batchelor TT, Rosen BR, Gerstner ER, Kalpathy-Cramer J. Expert-centered Evaluation of Deep Learning Algorithms for Brain Tumor Segmentation. Radiol Artif Intell. 2024 Jan;6(1):e220231. PubMed PMID: 38197800
  • de Sanjosé S, Perkins RB, Campos N, Inturrisi F, Egemen D, Befano B, Rodriguez AC, Jerónimo J, Cheung LC, Desai K, Han P, Novetsky AP, Ukwuani A, Marcus J, Ahmed SR, Wentzensen N, Kalpathy-Cramer J, Schiffman M. Design of the HPV-automated visual evaluation (PAVE) study: Validating a novel cervical screening strategy. Elife. 2024 Jan 15;12. PubMed PMID: 38224340
  • Lim-Fat MJ, Iorgulescu JB, Rahman R, Bhave V, Muzikansky A, Woodward E, Whorral S, Allen M, Touat M, Li X, Xy G, Patel J, Gerstner ER, Kalpathy-Cramer J, Youssef G, Chukwueke U, McFaline-Figueroa JR, Nayak L, Lee EQ, Reardon DA, Beroukhim R, Huang RY, Bi WL, Ligon KL, Wen PY. Clinical and Genomic Predictors of Adverse Events in Newly Diagnosed Glioblastoma. Clin Cancer Res. 2024 Apr 1;30(7):1327-1337. PubMed PMID: 38252427
  • Coyner AS, Murickan T, Oh MA, Young BK, Ostmo SR, Singh P, Chan RVP, Moshfeghi DM, Shah PK, Venkatapathy N, Chiang MF, Kalpathy-Cramer J, Campbell JP. Multinational External Validation of Autonomous Retinopathy of Prematurity Screening. JAMA Ophthalmol. 2024 Apr 1;142(4):327-335. PubMed PMID: 38451496
  • Kitamura FC, Prevedello LM, Colak E, Halabi SS, Lungren MP, Ball RL, Kalpathy-Cramer J, Kahn CE Jr, Richards T, Talbott JF, Shih G, Lin HM, Andriole KP, Vazirabad M, Erickson BJ, Flanders AE, Mongan J. Lessons Learned in Building Expertly Annotated Multi-Institution Datasets and Hosting the RSNA AI Challenges. Radiol Artif Intell. 2024 May;6(3):e230227. PubMed PMID: 38477659
  • Lorenzo G, Ahmed SR, Hormuth DA, Vaughn B, Kalpathy-Cramer J, Solorio L, Yankeelov TE, Gomez H. Patient-Specific, Mechanistic Models of Tumor Growth Incorporating Artificial Intelligence and Big Data. Annu Rev Biomed Eng. 2024 Jul;26(1):529-560. PubMed PMID: 38594947
  • Lin WC, Jordan BK, Scottoline B, Ostmo SR, Coyner AS, Singh P, Kalpathy-Cramer J, Erdogmus D, Chan RVP, Chiang MF, Campbell JP. Oxygenation Fluctuations Associated with Severe Retinopathy of Prematurity: Insights from a Multimodal Deep Learning Approach. Ophthalmol Sci. 2024 Mar-Apr;4(2):100417. PubMed PMID: 38059124
  • Lycke KD, Kalpathy-Cramer J, Jeronimo J, de Sanjose S, Egemen D, Del Pino M, Marcus J, Schiffman M, Hammer A. Agreement on Lesion Presence and Location at Colposcopy. J Low Genit Tract Dis. 2024 Jan 1;28(1):37-42. PubMed PMID: 37963327
  • Nguyen TP, Young BK, Coyner A, Ostmo S, Chan RVP, Kalpathy-Cramer J, Chiang MF, Campbell JP. Discrepancies in Diagnosis of Treatment-Requiring Retinopathy of Prematurity. Ophthalmol Retina. 2024 Jan;8(1):88-91. PubMed PMID: 37689182
  • Lim-Fat MJ, Iorgulescu JB, Rahman R, Bhave V, Muzikansky A, Woodward E, Whorral S, Allen M, Touat M, Li X, Xu G, Patel J, Gerstner ER, Kalpathy-Cramer J, Youssef G, Chukwueke U, McFaline-Figueroa JR, Nayak L, Lee EQ, Reardon DA, Beroukhim R, Huang RY, Bi WL, Ligon KL, Wen PY. Clinical and genomic predictors of adverse events in newly diagnosed glioblastoma. Clin Cancer Res. 2024 Jan 22. [Epub ahead of print] PubMed PMID: 38252427
  • de Sanjosé S, Perkins RB, Campos N, Inturrisi F, Egemen D, Befano B, Rodriguez AC, Jerónimo J, Cheung LC, Desai K, Han P, Novetsky AP, Ukwuani A, Marcus J, Ahmed SR, Wentzensen N, Kalpathy-Cramer J, Schiffman M. Design of the HPV-automated visual evaluation (PAVE) study: Validating a novel cervical screening strategy. Elife. 2024 Jan 15;12. PubMed PMID: 38224340
  • Hoebel KV, Bridge CP, Ahmed S, Akintola O, Chung C, Huang RY, Johnson JM, Kim A, Ly KI, Chang K, Patel J, Pinho M, Batchelor TT, Rosen BR, Gerstner ER, Kalpathy-Cramer J. Expert-centered Evaluation of Deep Learning Algorithms for Brain Tumor Segmentation. Radiol Artif Intell. 2024 Jan;6(1):e220231. PubMed PMID: 38197800
  • Li W, Partridge SC, Newitt DC, Steingrimsson J, Marques HS, Bolan PJ, Hirano M, Bearce BA, Kalpathy-Cramer J, Boss MA, Teng X, Zhang J, Cai J, Kontos D, Cohen EA, Mankowski WC, Liu M, Ha R, Pellicer-Valero OJ, Maier-Hein K, Rabinovici-Cohen S, Tlusty T, Ozery-Flato M, Parekh VS, Jacobs MA, Yan R, Sung K, Kazerouni AS, DiCarlo JC, Yankeelov TE, Chenevert TL, Hylton NM. Breast Multiparametric MRI for Prediction of Neoadjuvant Chemotherapy Response in Breast Cancer: The BMMR2 Challenge. Radiol Imaging Cancer. 2024 Jan;6(1):e230033. PubMed PMID: 38180338
  • Lin WC, Jordan BK, Scottoline B, Ostmo SR, Coyner AS, Singh P, Kalpathy-Cramer J, Erdogmus D, Chan RVP, Chiang MF, Campbell JP. Oxygenation Fluctuations Associated with Severe Retinopathy of Prematurity: Insights from a Multimodal Deep Learning Approach. Ophthalmol Sci. 2024 Mar-Apr;4(2):100417. PubMed PMID: 38059124
  • Lycke KD, Kalpathy-Cramer J, Jeronimo J, de Sanjose S, Egemen D, Del Pino M, Marcus J, Schiffman M, Hammer A. Agreement on Lesion Presence and Location at Colposcopy. J Low Genit Tract Dis. 2024 Jan 1;28(1):37-42. PubMed PMID: 37963327
  • Hoebel KV, Bridge CP, Kim A, Gerstner ER, Ly IK, Deng F, DeSalvo MN, Diettrich J, Huang R, Huang SY, Pomerantz SR, Vagvala S, Rosen BR, Kalpathy-Cramer J. Not without Context-A Multiple Methods Study on Evaluation and Correction of Automated Brain Tumor Segmentations by Experts. Acad Radiol. 2023 Nov 9. [Epub ahead of print] PubMed PMID: 37951777
  • Tan TF, Thirunavukarasu AJ, Campbell JP, Keane PA, Pasquale LR, Abramoff MD, Kalpathy-Cramer J, Lum F, Kim JE, Baxter SL, Ting DSW. Generative Artificial Intelligence Through ChatGPT and Other Large Language Models in Ophthalmology: Clinical Applications and Challenges. Ophthalmol Sci. 2023 Dec;3(4):100394. PubMed PMID: 37885755
  • Lin HM, Colak E, Richards T, Kitamura FC, Prevedello LM, Talbott J, Ball RL, Gumeler E, Yeom KW, Hamghalam M, Simpson AL, Strika J, Bulja D, Angkurawaranon S, Pérez-Lara A, Gómez-Alonso MI, Ortiz Jiménez J, Peoples JJ, Law M, Dogan H, Altinmakas E, Youssef A, Mahfouz Y, Kalpathy-Cramer J, Flanders AE. The RSNA Cervical Spine Fracture CT Dataset. Radiol Artif Intell. 2023 Sep;5(5):e230034. PubMed PMID: 37795143
  • Kontos D, Kalpathy-Cramer J. Breast Cancer Risk Assessment in the AI Era: The Importance of Model Validation in Ethnically Diverse Cohorts. Radiol Artif Intell. 2023 Nov;5(6):e230462. PubMed PMID: 38074794
  • Kim AE, Lou KW, Giobbie-Hurder A, Chang K, Gidwani M, Hoebel K, Patel JB, Cleveland MC, Singh P, Bridge CP, Ahmed SR, Bearce BA, Liu W, Fuster-Garcia E, Lee EQ, Lin NU, Overmoyer B, Wen PY, Nayak L, Cohen JV, Dietrich J, Eichler A, Heist R, Krop I, Lawrence D, Ligibel J, Tolaney S, Mayer E, Winer E, Perrino CM, Summers EJ, Mahar M, Oh K, Shih HA, Cahill DP, Rosen BR, Yen YF, Kalpathy-Cramer J, Martinez-Lage M, Sullivan RJ, Brastianos PK, Emblem KE, Gerstner ER. Abnormal vascular structure and function within brain metastases is linked to pembrolizumab resistance. Neuro Oncol. 2023 Dec 9. [Epub ahead of print] PubMed PMID: 38070147
  • Ahmed SR, Befano B, Lemay A, Egemen D, Rodriguez AC, Angara S, Desai K, Jeronimo J, Antani S, Campos N, Inturrisi F, Perkins R, Kreimer A, Wentzensen N, Herrero R, Del Pino M, Quint W, de Sanjose S, Schiffman M, Kalpathy-Cramer J. Reproducible and clinically translatable deep neural networks for cervical screening. Sci Rep. 2023 Dec 8;13(1):21772. PubMed PMID: 38066031
  • Patel NJ, D'Silva KM, Li MD, Hsu TYT, DiIorio M, Fu X, Cook C, Prisco L, Martin L, Vanni KMM, Zaccardelli A, Zhang Y, Kalpathy-Cramer J, Sparks JA, Wallace ZS. Assessing the Severity of COVID-19 Lung Injury in Rheumatic Diseases Versus the General Population Using Deep Learning-Derived Chest Radiograph Scores. Arthritis Care Res (Hoboken). 2023 Mar;75(3):657-666. PubMed PMID: 35313091
  • Eilts SK, Pfeil JM, Poschkamp B, Krohne TU, Eter N, Barth T, Guthoff R, Lagrèze W, Grundel M, Bründer MC, Busch M, Kalpathy-Cramer J, Chiang MF, Chan RVP, Coyner AS, Ostmo S, Campbell JP, Stahl A. Assessment of Retinopathy of Prematurity Regression and Reactivation Using an Artificial Intelligence-Based Vascular Severity Score. JAMA Netw Open. 2023 Jan 3;6(1):e2251512. PubMed PMID: 36656578
  • Sobhy M, Cole E, Jabbehdari S, Valikodath NG, Al-Khaled T, Kalinoski L, Chervinko M, Cherwek DH, Chuluunkhuu C, Shah PK, K C S, Jonas KE, Scanzera A, Yap VL, Yeh S, Kalpathy-Cramer J, Chiang MF, Campbell JP, Chan RVP. Operationalization of Retinopathy of Prematurity Screening by the Application of the Essential Public Health Services Framework. Int Ophthalmol Clin. 2023 Jan 1;63(1):39-63. PubMed PMID: 36598833
  • Robinson-Weiss C, Patel J, Bizzo BC, Glazer DI, Bridge CP, Andriole KP, Dabiri B, Chin JK, Dreyer K, Kalpathy-Cramer J, Mayo-Smith WW. Machine Learning for Adrenal Gland Segmentation and Classification of Normal and Adrenal Masses at CT. Radiology. 2023 Feb;306(2):e220101. PubMed PMID: 36125375
  • Bhandari SM, Singh P, Arun N, Sekimitsu S, Raghu V, Rauscher FG, Elze T, Horn K, Kirsten T, Scholz M, Segrè AV, Wiggs JL, Kalpathy-Cramer J, Zebardast N. Automated detection of genetic relatedness from fundus photographs using Siamese Neural Networks. medRxiv. 2023 Aug 23. PubMed PMID: 37662422
  • Arsava EM, Chang K, Tawakol A, Loggia ML, Goldstein JN, Brown J, Park KY, Singhal AB, Kalpathy-Cramer J, Sorensen AG, Rosen BR, Samuels MA, Ay H. Stroke-Related Visceral Alterations: A Voxel-Based Neuroanatomic Localization Study. Ann Neurol. 2023 Dec;94(6):1155-1163. PubMed PMID: 37642641
  • Cox M, Panagides JC, Di Capua J, Dua A, Kalva S, Kalpathy-Cramer J, Daye D. An interpretable machine learning model for the prevention of contrast-induced nephropathy in patients undergoing lower extremity endovascular interventions for peripheral arterial disease. Clin Imaging. 2023 Sep;101:1-7. PubMed PMID: 37247523
  • AlRyalat SA, Singh P, Kalpathy-Cramer J, Kahook MY. Artificial Intelligence and Glaucoma: Going Back to Basics. Clin Ophthalmol. 2023;17:1525-1530. PubMed PMID: 37284059
  • Ly KI, Richardson LG, Liu M, Muzikansky A, Cardona J, Lou K, Beers AL, Chang K, Brown JM, Ma X, Reardon DA, Arrillaga-Romany IC, Forst DA, Jordan JT, Lee EQ, Dietrich J, Nayak L, Wen PY, Chukwueke U, Giobbie-Hurder A, Choi BD, Batchelor TT, Kalpathy-Cramer J, Curry WT, Gerstner ER. Bavituximab Decreases Immunosuppressive Myeloid-Derived Suppressor Cells in Newly Diagnosed Glioblastoma Patients. Clin Cancer Res. 2023 Aug 15;29(16):3017-3025. PubMed PMID: 37327319
  • Whitney HM, Baughan N, Myers KJ, Drukker K, Gichoya J, Bower B, Chen W, Gruszauskas N, Kalpathy-Cramer J, Koyejo S, Sá RC, Sahiner B, Zhang Z, Giger ML. Longitudinal assessment of demographic representativeness in the Medical Imaging and Data Resource Center open data commons. J Med Imaging (Bellingham). 2023 Nov;10(6):61105. PubMed PMID: 37469387
  • Jang I, Hoffmann M, Singh N, Balbastre Y, Chen L, Rockenbach MABC, Dalca A, Aganj I, Kalpathy-Cramer J, Fischl B, Frost R. Clinical evaluation of k-space correlation informed motion artifact detection in segmented multi-slice MRI. Proc Int Soc Magn Reson Med Sci Meet Exhib Int Soc Magn Reson Med Sci Meet Exhib. 2023 Jun;2023. PubMed PMID: 37565069
  • Young BK, Cole ED, Shah PK, Ostmo S, Subramaniam P, Venkatapathy N, Tsai ASH, Coyner AS, Gupta A, Singh P, Chiang MF, Kalpathy-Cramer J, Chan RVP, Campbell JP. Efficacy of Smartphone-Based Telescreening for Retinopathy of Prematurity With and Without Artificial Intelligence in India. JAMA Ophthalmol. 2023 Jun 1;141(6):582-588. PubMed PMID: 37166816
  • Yang E, Li MD, Raghavan S, Deng F, Lang M, Succi MD, Huang AJ, Kalpathy-Cramer J. Transformer versus traditional natural language processing: how much data is enough for automated radiology report classification?. Br J Radiol. 2023 Sep;96(1149):20220769. PubMed PMID: 37162253
  • Coyner AS, Singh P, Brown JM, Ostmo S, Chan RVP, Chiang MF, Kalpathy-Cramer J, Campbell JP. Association of Biomarker-Based Artificial Intelligence With Risk of Racial Bias in Retinal Images. JAMA Ophthalmol. 2023 Jun 1;141(6):543-552. PubMed PMID: 37140902
  • Drukker K, Chen W, Gichoya J, Gruszauskas N, Kalpathy-Cramer J, Koyejo S, Myers K, Sá RC, Sahiner B, Whitney H, Zhang Z, Giger M. Toward fairness in artificial intelligence for medical image analysis: identification and mitigation of potential biases in the roadmap from data collection to model deployment. J Med Imaging (Bellingham). 2023 Nov;10(6):061104. PubMed PMID: 37125409
  • Perkins RB, Smith DL, Jeronimo J, Campos NG, Gage JC, Hansen N, Rodriguez AC, Cheung LC, Egemen D, Befano B, Novetsky AP, Martins S, Kalpathy-Cramer J, Inturrisi F, Ahmed SR, Marcus J, Wentzensen N, de Sanjose S, Schiffman M. Use of risk-based cervical screening programs in resource-limited settings. Cancer Epidemiol. 2023 Jun;84:102369. PubMed PMID: 37105017
  • deCampos-Stairiker MA, Coyner AS, Gupta A, Oh M, Shah PK, Subramanian P, Venkatapathy N, Singh P, Kalpathy-Cramer J, Chiang MF, Chan RVP, Campbell JP. Epidemiologic Evaluation of Retinopathy of Prematurity Severity in a Large Telemedicine Program in India Using Artificial Intelligence. Ophthalmology. 2023 Aug;130(8):837-843. PubMed PMID: 37030453
  • Deng B, Gu H, Zhu H, Chang K, Hoebel KV, Patel JB, Kalpathy-Cramer J, Carp SA. FDU-Net: Deep Learning-Based Three-Dimensional Diffuse Optical Image Reconstruction. IEEE Trans Med Imaging. 2023 Aug;42(8):2439-2450. PubMed PMID: 37028063
  • Ahmed SR, Befano B, Lemay A, Egemen D, Rodriguez AC, Angara S, Desai K, Jeronimo J, Antani S, Campos N, Inturrisi F, Perkins R, Kreimer A, Wentzensen N, Herrero R, Del Pino M, Quint W, de Sanjose S, Schiffman M, Kalpathy-Cramer J. REPRODUCIBLE AND CLINICALLY TRANSLATABLE DEEP NEURAL NETWORKS FOR CANCER SCREENING. Res Sq. 2023 Mar 3. PubMed PMID: 36909463
  • Lauer A, Speroni SL, Choi M, Da X, Duncan C, McCarthy S, Krishnan V, Lusk CA, Rohde D, Hansen MB, Kalpathy-Cramer J, Loes DJ, Caruso PA, Williams DA, Mouridsen K, Emblem KE, Eichler FS, Musolino PL. Hematopoietic stem-cell gene therapy is associated with restored white matter microvascular function in cerebral adrenoleukodystrophy. Nat Commun. 2023 Apr 5;14(1):1900. PubMed PMID: 37019892
  • Gupta S, Kumar S, Chang K, Lu C, Singh P, Kalpathy-Cramer J. Collaborative Privacy-preserving Approaches for Distributed Deep Learning Using Multi-Institutional Data. Radiographics. 2023 Apr;43(4):e220107. PubMed PMID: 36862082
  • Eilts SK, Pfeil JM, Poschkamp B, Krohne TU, Eter N, Barth T, Guthoff R, Lagrèze W, Grundel M, Bründer MC, Busch M, Kalpathy-Cramer J, Chiang MF, Chan RVP, Coyner AS, Ostmo S, Campbell JP, Stahl A. Assessment of Retinopathy of Prematurity Regression and Reactivation Using an Artificial Intelligence-Based Vascular Severity Score. JAMA Netw Open. 2023 Jan 3;6(1):e2251512. PubMed PMID: 36656578
  • Sobhy M, Cole E, Jabbehdari S, Valikodath NG, Al-Khaled T, Kalinoski L, Chervinko M, Cherwek DH, Chuluunkhuu C, Shah PK, K C S, Jonas KE, Scanzera A, Yap VL, Yeh S, Kalpathy-Cramer J, Chiang MF, Campbell JP, Chan RVP. Operationalization of Retinopathy of Prematurity Screening by the Application of the Essential Public Health Services Framework. Int Ophthalmol Clin. 2023 Jan 1;63(1):39-63. PubMed PMID: 36598833
  • Gidwani M, Chang K, Patel JB, Hoebel KV, Ahmed SR, Singh P, Fuller CD, Kalpathy-Cramer J. Inconsistent Partitioning and Unproductive Feature Associations Yield Idealized Radiomic Models. Radiology. 2023 Apr;307(1):e220715. PubMed PMID: 36537895
  • Robinson-Weiss C, Patel J, Bizzo BC, Glazer DI, Bridge CP, Andriole KP, Dabiri B, Chin JK, Dreyer K, Kalpathy-Cramer J, Mayo-Smith WW. Machine Learning for Adrenal Gland Segmentation and Classification of Normal and Adrenal Masses at CT. Radiology. 2023 Feb;306(2):e220101. PubMed PMID: 36125375
  • Patel NJ, D'Silva KM, Li MD, Hsu TYT, DiIorio M, Fu X, Cook C, Prisco L, Martin L, Vanni KMM, Zaccardelli A, Zhang Y, Kalpathy-Cramer J, Sparks JA, Wallace ZS. Assessing the Severity of COVID-19 Lung Injury in Rheumatic Diseases Versus the General Population Using Deep Learning-Derived Chest Radiograph Scores. Arthritis Care Res (Hoboken). 2023 Mar;75(3):657-666. PubMed PMID: 35313091
  • Kim AE, Lou KW, Giobbie-Hurder A, Chang K, Gidwani M, Hoebel K, Patel JB, Cleveland MC, Singh P, Bridge CP, Ahmed SR, Bearce BA, Liu W, Fuster-Garcia E, Lee EQ, Lin NU, Overmoyer B, Wen PY, Nayak L, Cohen JV, Dietrich J, Eichler A, Heist R, Krop I, Lawrence D, Ligibel J, Tolaney S, Mayer E, Winer E, Perrino CM, Summers EJ, Mahar M, Oh K, Shih HA, Cahill DP, Rosen BR, Yen YF, Kalpathy-Cramer J, Martinez-Lage M, Sullivan RJ, Brastianos PK, Emblem KE, Gerstner ER. Structural and functional vascular dysfunction within brain metastases is linked to pembrolizumab inefficacy. bioRxiv. 2023 Aug 28. PubMed PMID: 37693537
  • de Sanjosé S, Perkins RB, Campos NG, Inturrisi F, Egemen D, Befano B, Rodriguez AC, Jerónimo J, Cheung LC, Desai K, Han P, Novetsky AP, Ukwuani A, Marcus J, Ahmed SR, Wentzensen N, Kalpathy-Cramer J, Schiffman M. Design of the HPV-Automated Visual Evaluation (PAVE) Study: Validating a Novel Cervical Screening Strategy. medRxiv. 2023 Oct 23. PubMed PMID: 37693492
  • Lorenzo G, Ahmed SR, Ii DAH, Vaughn B, Kalpathy-Cramer J, Solorio L, Yankeelov TE, Gomez H. Patient-specific, mechanistic models of tumor growth incorporating artificial intelligence and big data. ArXiv. 2023 Aug 28. PubMed PMID: 37693182
  • Konz N, Buda M, Gu H, Saha A, Yang J, Chledowski J, Park J, Witowski J, Geras KJ, Shoshan Y, Gilboa-Solomon F, Khapun D, Ratner V, Barkan E, Ozery-Flato M, Martí R, Omigbodun A, Marasinou C, Nakhaei N, Hsu W, Sahu P, Hossain MB, Lee J, Santos C, Przelaskowski A, Kalpathy-Cramer J, Bearce B, Cha K, Farahani K, Petrick N, Hadjiiski L, Drukker K, Armato SG 3rd, Mazurowski MA. A Competition, Benchmark, Code, and Data for Using Artificial Intelligence to Detect Lesions in Digital Breast Tomosynthesis. JAMA Netw Open. 2023 Feb 1;6(2):e230524. PubMed PMID: 36821110
  • Kumar S, Lakshminarayanan A, Chang K, Guretno F, Mien IH, Kalpathy-Cramer J, Krishnaswamy P, Singh P. Towards More Efficient Data Valuation in Healthcare Federated Learning using Ensembling. Distrib Collab Fed Learn Afford AI Healthc Resour Div Glob Health (2022). 2022 Sep;13573:119-129. PubMed PMID: 36745141
  • O'Shea A, Li MD, Mercaldo ND, Balthazar P, Som A, Yeung T, Succi MD, Little BP, Kalpathy-Cramer J, Lee SI. Intubation and mortality prediction in hospitalized COVID-19 patients using a combination of convolutional neural network-based scoring of chest radiographs and clinical data. BJR Open. 2022;4(1):20210062. PubMed PMID: 36105420
  • Bridge CP, Gorman C, Pieper S, Doyle SW, Lennerz JK, Kalpathy-Cramer J, Clunie DA, Fedorov AY, Herrmann MD. Highdicom: a Python Library for Standardized Encoding of Image Annotations and Machine Learning Model Outputs in Pathology and Radiology. J Digit Imaging. 2022 Dec;35(6):1719-1737. PubMed PMID: 35995898
  • Li MD, Arun NT, Aggarwal M, Gupta S, Singh P, Little BP, Mendoza DP, Corradi GCA, Takahashi MS, Ferraciolli SF, Succi MD, Lang M, Bizzo BC, Dayan I, Kitamura FC, Kalpathy-Cramer J. Multi-population generalizability of a deep learning-based chest radiograph severity score for COVID-19. Medicine (Baltimore). 2022 Jul 22;101(29):e29587. PubMed PMID: 35866818
  • Coyner AS, Oh MA, Shah PK, Singh P, Ostmo S, Valikodath NG, Cole E, Al-Khaled T, Bajimaya S, K C S, Chuluunbat T, Munkhuu B, Subramanian P, Venkatapathy N, Jonas KE, Hallak JA, Chan RVP, Chiang MF, Kalpathy-Cramer J, Campbell JP. External Validation of a Retinopathy of Prematurity Screening Model Using Artificial Intelligence in 3 Low- and Middle-Income Populations. JAMA Ophthalmol. 2022 Aug 1;140(8):791-798. PubMed PMID: 35797036
  • Zhang M, Qu L, Singh P, Kalpathy-Cramer J, Rubin DL. SplitAVG: A Heterogeneity-Aware Federated Deep Learning Method for Medical Imaging. IEEE J Biomed Health Inform. 2022 Sep;26(9):4635-4644. PubMed PMID: 35749336
  • Chavva IR, Crawford AL, Mazurek MH, Yuen MM, Prabhat AM, Payabvash S, Sze G, Falcone GJ, Matouk CC, de Havenon A, Kim JA, Sharma R, Schiff SJ, Rosen MS, Kalpathy-Cramer J, Iglesias Gonzalez JE, Kimberly WT, Sheth KN. Deep Learning Applications for Acute Stroke Management. Ann Neurol. 2022 Oct;92(4):574-587. PubMed PMID: 35689531
  • Cole ED, Park SH, Kim SJ, Kang KB, Valikodath NG, Al-Khaled T, Patel SN, Jonas KE, Ostmo S, Coyner A, Berrocal A, Drenser KA, Nagiel A, Horowitz JD, Lee TC, Kalpathy-Cramer J, Chiang MF, Campbell JP, Chan RVP. Variability in Plus Disease Diagnosis using Single and Serial Images. Ophthalmol Retina. 2022 Dec;6(12):1122-1129. PubMed PMID: 35659941
  • Ardestani A, Li MD, Chea P, Wortman JR, Medina A, Kalpathy-Cramer J, Wald C. External COVID-19 Deep Learning Model Validation on ACR AI-LAB: It's a Brave New World. J Am Coll Radiol. 2022 Jul;19(7):891-900. PubMed PMID: 35483438
  • Cox M, Reid N, Panagides JC, Di Capua J, DeCarlo C, Dua A, Kalva S, Kalpathy-Cramer J, Daye D. Interpretable Machine Learning for the Prediction of Amputation Risk Following Lower Extremity Infrainguinal Endovascular Interventions for Peripheral Arterial Disease. Cardiovasc Intervent Radiol. 2022 May;45(5):633-640. PubMed PMID: 35322303
  • Gidwani M, Chang K, Patel JB, Hoebel KV, Ahmed SR, Singh P, Fuller CD, Kalpathy-Cramer J. Inconsistent Partitioning and Unproductive Feature Associations Yield Idealized Radiomic Models. Radiology. 2022 Dec 20;:220715. [Epub ahead of print] PubMed PMID: 36537895
  • Cole E, Valikodath NG, Al-Khaled T, Bajimaya S, Kc S, Chuluunbat T, Munkhuu B, Jonas KE, Chuluunkhuu C, MacKeen LD, Yap V, Hallak J, Ostmo S, Wu WC, Coyner AS, Singh P, Kalpathy-Cramer J, Chiang MF, Campbell JP, Chan RVP. Evaluation of an Artificial Intelligence System for Retinopathy of Prematurity Screening in Nepal and Mongolia. Ophthalmol Sci. 2022 Dec;2(4):100165. PubMed PMID: 36531583
  • Cox M, Panagides JC, Tabari A, Kalva S, Kalpathy-Cramer J, Daye D. Risk stratification with explainable machine learning for 30-day procedure-related mortality and 30-day unplanned readmission in patients with peripheral arterial disease. PLoS One. 2022;17(11):e0277507. PubMed PMID: 36409699
  • Lemay A, Hoebel K, Bridge CP, Befano B, De Sanjosé S, Egemen D, Rodriguez AC, Schiffman M, Campbell JP, Kalpathy-Cramer J. Improving the repeatability of deep learning models with Monte Carlo dropout. NPJ Digit Med. 2022 Nov 18;5(1):174. PubMed PMID: 36400939
  • Brink L, Coombs LP, Kattil Veettil D, Kuchipudi K, Marella S, Schmidt K, Nair SS, Tilkin M, Treml C, Chang K, Kalpathy-Cramer J. ACR's Connect and AI-LAB technical framework. JAMIA Open. 2022 Dec;5(4):ooac094. PubMed PMID: 36380846
  • Hanif A, Yildiz I, Tian P, Kalkanli B, Erdogmus D, Ioannidis S, Dy J, Kalpathy-Cramer J, Ostmo S, Jonas K, Chan RVP, Chiang MF, Campbell JP. Improved Training Efficiency for Retinopathy of Prematurity Deep Learning Models Using Comparison versus Class Labels. Ophthalmol Sci. 2022 Jun;2(2):100122. PubMed PMID: 36249702
  • Coyner AS, Chen JS, Chang K, Singh P, Ostmo S, Chan RVP, Chiang MF, Kalpathy-Cramer J, Campbell JP. Synthetic Medical Images for Robust, Privacy-Preserving Training of Artificial Intelligence: Application to Retinopathy of Prematurity Diagnosis. Ophthalmol Sci. 2022 Jun;2(2):100126. PubMed PMID: 36249693
  • Trivedi A, Robinson C, Blazes M, Ortiz A, Desbiens J, Gupta S, Dodhia R, Bhatraju PK, Liles WC, Kalpathy-Cramer J, Lee AY, Lavista Ferres JM. Deep learning models for COVID-19 chest x-ray classification: Preventing shortcut learning using feature disentanglement. PLoS One. 2022;17(10):e0274098. PubMed PMID: 36201483
  • Hanif A, Lu C, Chang K, Singh P, Coyner AS, Brown JM, Ostmo S, Chan RVP, Rubin D, Chiang MF, Kalpathy-Cramer J, Campbell JP. Federated Learning for Multicenter Collaboration in Ophthalmology: Implications for Clinical Diagnosis and Disease Epidemiology. Ophthalmol Retina. 2022 Aug;6(8):650-656. PubMed PMID: 35304305
  • Lu C, Hanif A, Singh P, Chang K, Coyner AS, Brown JM, Ostmo S, Chan RVP, Rubin D, Chiang MF, Campbell JP, Kalpathy-Cramer J. Federated Learning for Multicenter Collaboration in Ophthalmology: Improving Classification Performance in Retinopathy of Prematurity. Ophthalmol Retina. 2022 Aug;6(8):657-663. PubMed PMID: 35296449
  • Bridge CP, Best TD, Wrobel MM, Marquardt JP, Magudia K, Javidan C, Chung JH, Kalpathy-Cramer J, Andriole KP, Fintelmann FJ. A Fully Automated Deep Learning Pipeline for Multi-Vertebral Level Quantification and Characterization of Muscle and Adipose Tissue on Chest CT Scans. Radiol Artif Intell. 2022 Jan;4(1):e210080. PubMed PMID: 35146434
  • Campbell JP, Chiang MF, Chen JS, Moshfeghi DM, Nudleman E, Ruambivoonsuk P, Cherwek H, Cheung CY, Singh P, Kalpathy-Cramer J, Ostmo S, Eydelman M, Chan RVP, Capone A Jr. Artificial Intelligence for Retinopathy of Prematurity: Validation of a Vascular Severity Scale against International Expert Diagnosis. Ophthalmology. 2022 Jul;129(7):e69-e76. PubMed PMID: 35157950
  • Li MD, Chang K, Mei X, Bernheim A, Chung M, Steinberger S, Kalpathy-Cramer J, Little BP. Radiology Implementation Considerations for Artificial Intelligence (AI) Applied to COVID-19, From the AJR Special Series on AI Applications. AJR Am J Roentgenol. 2022 Jul;219(1):15-23. PubMed PMID: 34612681
  • Peng J, Kim DD, Patel JB, Zeng X, Huang J, Chang K, Xun X, Zhang C, Sollee J, Wu J, Dalal DJ, Feng X, Zhou H, Zhu C, Zou B, Jin K, Wen PY, Boxerman JL, Warren KE, Poussaint TY, States LJ, Kalpathy-Cramer J, Yang L, Huang RY, Bai HX. Deep learning-based automatic tumor burden assessment of pediatric high-grade gliomas, medulloblastomas, and other leptomeningeal seeding tumors. Neuro Oncol. 2022 Feb 1;24(2):289-299. PubMed PMID: 34174070
  • Li MD, Ahmed SR, Choy E, Lozano-Calderon SA, Kalpathy-Cramer J, Chang CY. Artificial intelligence applied to musculoskeletal oncology: a systematic review. Skeletal Radiol. 2022 Feb;51(2):245-256. PubMed PMID: 34013447
  • Li MD, Deng F, Chang K, Kalpathy-Cramer J, Huang AJ. Automated Radiology-Arthroscopy Correlation of Knee Meniscal Tears Using Natural Language Processing Algorithms. Acad Radiol. 2022 Apr;29(4):479-487. PubMed PMID: 33583713

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