Shaikh Atif, PhD

Publications

• Methods Mol Biol. 2018;1784:69-76. doi: 10.1007/978-1-4939-7837-3_6.
• Am J Respir Cell Mol Biol. 2018 Nov;59(5):580-591. doi: 10.1165/rcmb.2018-0159OC
• Atif SM, Mack DG, McKee AS, Rangel-Moreno J, Martin AK, Getahun A, Maier LA, Cambier JC, Tuder R, Fontenot AP. Protective role of B cells in sterile particulate-induced lung injury. JCI Insight. 2019 May 16;5. pii: 125494. doi: 10.1172/jci.insight.125494.
• murray and nadel's textbook of respiratory medicine 7th edition
• Shaikh M Atif, Douglas Mack, Amy S McKee, Javier Rangel-Moreno, Allison K Martin, Andrew Getahun, Lisa A Maier, John C Cambier, Rubin M Tuder, Andrew P Fontenot. The Journal of Immunology, 202, 1 Supplement, P182.68-182.68.
• Ajay Suresh Akhade, Shaikh M Atif, Bhavana S Lakshmi, Neha Dikshit, Ayub Qadri, Naeha Subramanian. The Journal of Immunology, 202, 1 Supplement, P 63.13-63.13
• Akhade AS, Atif SM, Lakshmi BS, Dikshit N, Hughes KT, Qadri A, Subramanian N. Type 1 interferon-dependent repression of NLRC4 and iPLA2 licenses down-regulation of Salmonella flagellin inside macrophages. Proc Natl Acad Sci U S A. 2020 Nov 24;117(47):29811-29822. PubMed PMID: 33177235
• Leach SM, Gibbings SL, Tewari AD, Atif SM, Vestal B, Danhorn T, Janssen WJ, Wager TD, Jakubzick CV. Human and Mouse Transcriptome Profiling Identifies Cross-Species Homology in Pulmonary and Lymph Node Mononuclear Phagocytes. Cell Rep. 2020 Nov 3;33(5):108337. PubMed PMID: 33147458
• Neff CP, Atif SM, Logue EC, Siebert J, Görg C, Lavelle J, Fiorillo S, Twigg H, Campbell TB, Fontenot AP, Palmer BE. HIV Infection Is Associated with Loss of Anti-Inflammatory Alveolar Macrophages. J Immunol. 2020 Nov 1;205(9):2447-2455. PubMed PMID: 32929038
• Greaves SA, Atif SM, Fontenot AP. Adaptive Immunity in Pulmonary Sarcoidosis and Chronic Beryllium Disease. Front Immunol. 2020;11:474. PubMed PMID: 32256501
• Collins MK, Shotland AM, Wade MF, Atif SM, Richards DK, Torres-Llompart M, Mack DG, Martin AK, Fontenot AP, McKee AS. A role for TNF-a in alveolar macrophage damage-associated molecular pattern release. JCI Insight. 2020 May 7;5(9). PubMed PMID: 32255768
• Schaefer REM, Callahan RC, Atif SM, Orlicky DJ, Cartwright IM, Fontenot AP, Colgan SP, Onyiah JC. Disruption of monocyte-macrophage differentiation and trafficking by a heme analog during active inflammation. Mucosal Immunol. 2021 Dec 16. [Epub ahead of print] PubMed PMID: 34916594
• Atif SM, Fontenot AP. T-Follicular Helper-like Cells in Sarcoidosis: Lending a Helping Hand. Am J Respir Crit Care Med. 2021 Dec 15;204(12):1357-1359. PubMed PMID: 34710337
• Atif SM, Mack DG, Martin AK, Fontenot AP. Protective role of tissue-resident Tregs in a murine model of beryllium-induced disease. JCI Insight. 2022 Aug 22;7(16). PubMed PMID: 35819849
• Greaves SA, Ravindran A, Santos RG, Chen L, Falta MT, Wang Y, Mitchell AM, Atif SM, Mack DG, Tinega AN, Maier LA, Dai S, Pinilla C, Grunewald J, Fontenot AP. CD4 T cells in the lungs of acute sarcoidosis patients recognize an Aspergillus nidulans epitope. J Exp Med. 2021 Oct 4;218(10). PubMed PMID: 34410304
• McKee AS, Atif SM, Falta MT, Fontenot AP. Innate and Adaptive Immunity in Noninfectious Granulomatous Lung Disease. J Immunol. 2022 Apr 15;208(8):1835-1843. PubMed PMID: 35418504
• Schaefer REM, Callahan RC, Atif SM, Orlicky DJ, Cartwright IM, Fontenot AP, Colgan SP, Onyiah JC. Disruption of monocyte-macrophage differentiation and trafficking by a heme analog during active inflammation. Mucosal Immunol. 2022 Feb;15(2):244-256. PubMed PMID: 34916594
• Falta MT, Crawford JC, Tinega AN, Landry LG, Crawford F, Mack DG, Martin AK, Atif SM, Li L, Santos RG, Nakayama M, Kappler JW, Maier LA, Thomas PG, Pinilla C, Fontenot AP. Beryllium-specific CD4 T cells induced by chemokine neoantigens perpetuate inflammation. J Clin Invest. 2021 May 3;131(9). PubMed PMID: 33630763
• Liao SY, Atif SM, Mould K, Konigsberg IR, Fu R, Davidson E, Li L, Fontenot AP, Maier LA, Yang IV. Single-cell RNA sequencing identifies macrophage transcriptional heterogeneities in granulomatous diseases. Eur Respir J. 2021 Jun;57(6). PubMed PMID: 33602861
• Dinarello A, May M, Amo-Aparicio J, Azam T, Gaballa JM, Marchetti C, Tesoriere A, Ghirardo R, Redzic JS, Webber WS 3rd, Atif SM, Li S, Eisenmesser EZ, de Graaf DM, Dinarello CA. IL-38 regulates intestinal stem cell homeostasis by inducing WNT signaling and beneficial IL-1ß secretion. Proc Natl Acad Sci U S A. 2023 Nov 7;120(45):e2306476120. PubMed PMID: 37906644
• Amo-Aparicio J, Dominguez A, Atif SM, Dinarello A, Azam T, Alula KM, Piper M, Lieu CH, Lentz RW, Leal AD, Bagby SM, Messersmith WA, Karam SD, Dinarello CA, Pitts TM, Marchetti C. Pancreatic Ductal Adenocarcinoma Cells Regulate NLRP3 Activation to Generate a Tolerogenic Microenvironment. Cancer Res Commun. 2023 Sep 20;3(9):1899-1911. PubMed PMID: 37772994
• Neff CP, Cikara M, Geiss BJ, Thomas Caltagirone G, Liao A, Atif SM, Macdonald B, Schaden R. Nucleocapsid protein binding DNA aptamers for detection of SARS-COV-2. Curr Res Biotechnol. 2023;5:100132. PubMed PMID: 37275459