Kevin Cohen, MA
Instructor, Pharmacology

Department: Pharmacology


  • Zhou K, Zhang S, Wang Y, Cohen KB, Kim JD, Luo Q, Yao X, Zhou X, Xia J. High-quality gene/disease embedding in a multi-relational heterogeneous graph after a joint matrix/tensor decomposition. J Biomed Inform. 2022 Feb;126:103973. PubMed PMID: 34995810
  • Kim JD, Cohen KB, Rinaldi F, Lu Z, Park HS. Editor's introduction to the special section on the 7th Biomedical Linked Annotation Hackathon (BLAH7). Genomics Inform. 2021 Sep;19(3):e20. PubMed PMID: 34638167
  • Neuraz, A., Lerner, I., Digan, W., Paris, N., Tsopra, R., Rogier, A., Baudoin, D., Cohen, K.B., Burgun, A., Garcelon, N. and Rance, B., 2020. Natural language processing for rapid response to emergent diseases: Case study of calcium channel blockers and hypertension in the COVID-19 pandemic. Journal of medical Internet research, 22(8), p.e20773.
  • Kim, J. D., Cohen, K. B., Rinaldi, F., Lu, Z., Collier, N., & Park, H. S. (2020). Editor’s introduction to the special issue of the 6th Biomedical Linked Annotation Hackathon (BLAH6). Genomics & Informatics, 18(2).
  • Cohen, K. Bretonnel, Lawrence E. Hunter, and Peter S. Pressman. "P-Hacking Lexical Richness Through Definitions of" Type" and" Token"." In MedInfo, pp. 1433-1434. 2019.
  • Kim, Jin-Dong, Yue Wang, Toyofumi Fujiwara, Shujiro Okuda, Tiffany J. Callahan, and K. Bretonnel Cohen. "Open Agile text mining for bioinformatics: the PubAnnotation ecosystem." Bioinformatics 35, no. 21 (2019): 4372-4380.
  • Pressman, Peter S., Elliott D. Ross, Kevin B. Cohen, Kuan-Hua Chen, Bruce L. Miller, Lawrence E. Hunter, Maria Luisa Gorno-Tempini, and Robert W. Levenson. "Interpersonal prosodic correlation in frontotemporal dementia." Annals of clinical and translational neurology 6, no. 7 (2019): 1352-1357.
  • Kim, Jin-Dong, Kevin Bretonnel Cohen, Nigel Collier, Zhiyong Lu, and Fabio Rinaldi. "Introduction to BLAH5 special issue: recent progress on interoperability of biomedical text mining." Genomics & informatics 17, no. 2 (2019).
  • Zhou, Kai Yin, Yu Xing Wang, Sheng Zhang, Mina Gachloo, Jin Dong Kim, Qi Luo, Kevin Bretonnel Cohen, and Jing Bo Xia. "GOF/LOF knowledge inference with tensor decomposition in support of high order link discovery for gene, mutation and disease." Math Biosci Eng 16, no. 3 (2019): 1376-1391.
  • Boguslav M, Cohen KB, Baumgartner WA, Hunter LE. Improving precision in concept normalization. Pac Symp Biocomput. 2018;23:566-577. PubMed PMID: 29218915
  • Cohen KB, Xia J, Zweigenbaum P, Callahan TJ, Hargraves O, Goss F, Ide N, Névéol A, Grouin C, Hunter LE. Three Dimensions of Reproducibility in Natural Language Processing. LREC Int Conf Lang Resour Eval. 2018 May;2018:156-165. PubMed PMID: 29911205
  • Boguslav M, Cohen KB, Baumgartner WA, Hunter LE. Improving precision in concept normalization. Pac Symp Biocomput. 2018;23:566-577. PubMed PMID: 29218915
  • Cardoso S, Aimé X, Meininger V, Grabli D, Melo Mora LF, Cohen KB, Charlet J. A Modular Ontology for Modeling Service Provision in a Communication Network for Coordination of Care. Stud Health Technol Inform. 2018;247:890-894. PubMed PMID: 29678089
  • Yadav P, Jezek E, Bouillon P, Callahan TJ, Bada M, Hunter LE, Cohen KB. Semantic Relations in Compound Nouns: Perspectives from Inter-Annotator Agreement. Stud Health Technol Inform. 2017;245:644-648. PubMed PMID: 29295175
  • Cohen KB, Goss FR, Zweigenbaum P, Hunter LE. Translational Morphosyntax: Distribution of Negation in Clinical Records and Biomedical Journal Articles. Stud Health Technol Inform. 2017;245:346-350. PubMed PMID: 29295113
  • Boguslav M, Cohen KB. Inter-Annotator Agreement and the Upper Limit on Machine Performance: Evidence from Biomedical Natural Language Processing. Stud Health Technol Inform. 2017;245:298-302. PubMed PMID: 29295103
  • Cohen KB, Lanfranchi A, Choi MJ, Bada M, Baumgartner WA Jr, Panteleyeva N, Verspoor K, Palmer M, Hunter LE. Coreference annotation and resolution in the Colorado Richly Annotated Full Text (CRAFT) corpus of biomedical journal articles. BMC Bioinformatics. 2017 Aug 17;18(1):372. PubMed PMID: 28818042
  • Connolly B, Cohen KB, Santel D, Bayram U, Pestian J. A nonparametric Bayesian method of translating machine learning scores to probabilities in clinical decision support. BMC Bioinformatics. 2017 Aug 7;18(1):361. PubMed PMID: 28784111
  • Funk CS, Cohen KB, Hunter LE, Verspoor KM. Gene Ontology synonym generation rules lead to increased performance in biomedical concept recognition. J Biomed Semantics. 2016 Sep 9;7:52. PubMed PMID: 27613112
  • Hirschman L, Fort K, Boué S, Kyrpides N, Islamaj Dogan R, Cohen KB. Crowdsourcing and curation: perspectives from biology and natural language processing. Database (Oxford). 2016;2016. PubMed PMID: 27504010
  • Cohen KB, Glass B, Greiner HM, Holland-Bouley K, Standridge S, Arya R, Faist R, Morita D, Mangano F, Connolly B, Glauser T, Pestian J. Methodological Issues in Predicting Pediatric Epilepsy Surgery Candidates Through Natural Language Processing and Machine Learning. Biomed Inform Insights. 2016 May 22;8:11-8. PubMed PMID: 27257386
View All (21 Total) View Less

General Information

Department: Pharmacology
Contact Us
CU Anschutz
Fitzsimons Building

13001 East 17th Place
Campus Box C290
Aurora, CO 80045

Update My Profile